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Is there somewhere in Payroll 6 that limits the number of EFT's that can be printed. My last payroll run I tried to print 104 EFT's the most I have ever run. Only 100 printed. So I searched everything in Payroll 6 and the Blackbaud knowledge base and can not find an answer.
We usually run around 180 eft's on just one of our payrolls each month. We have never had any problems with it not printing all of them. Next time you run make sure you select the approve all button, I did notice that sometimes some of the people are not by default selected to print when you are in the print checks screen.